entity

This section is auto-generated from the help text for the tripaille command entity.

add_entity command

Usage:

tripaille entity add_entity [OPTIONS] ENTITY

Help

Add a new entity to the database

Output

Entity information

Options:

--params TEXT  Values to populate the entity fields
-h, --help     Show this message and exit.

get_bundles command

Usage:

tripaille entity get_bundles [OPTIONS]

Help

Get the list of tripal bundles

Output

Bundles information

Options:

-h, --help  Show this message and exit.

get_entities command

Usage:

tripaille entity get_entities [OPTIONS]

Help

Get entities

Output

Entity information

Options:

--entity TEXT        Name of the entity type (e.g. Organism)
--entity_id INTEGER  ID of an entity
-h, --help           Show this message and exit.

get_fields command

Usage:

tripaille entity get_fields [OPTIONS] ENTITY

Help

Get the list of available fields for an entity

Output

Fields information

Options:

-h, --help  Show this message and exit.

publish command

Usage:

tripaille entity publish [OPTIONS]

Help

Publish entities (Tripal 3 only)

Output

status

Options:

--types TEXT     List of entity types to be published (e.g. Gene mRNA,
                 default: all)
--job_name TEXT  Name of the job
--no_wait        Return immediately without waiting for job completion
-h, --help       Show this message and exit.