Commands

Tripaille is a set of wrappers for accessing Tripal. Each utility is implemented as a subcommand of tripaille. This section of the documentation describes these commands.

• analysis
  • add_analysis command
  • delete_orphans command
  • get_analyses command
  • get_analyses_tripal command
  • load_blast command
  • load_fasta command
  • load_gff3 command
  • load_go command
  • load_interpro command
  • sync command
• db
  • get_dbs command
  • get_mviews command
  • index command
  • populate_mviews command
• entity
  • add_entity command
  • get_bundles command
  • get_entities command
  • get_fields command
  • publish command
• expression
  • add_biomaterial command
  • add_expression command
  • delete_biomaterials command
  • get_biomaterials command
  • sync_biomaterials command
• feature
  • delete_orphans command
  • get_features_tripal command
  • sync command
• job
  • add_import_job command
  • add_job command
  • get_jobs command
  • get_logs command
  • run_jobs command
  • wait command
• organism
  • add_organism command
  • delete_orphans command
  • get_organisms command
  • get_organisms_tripal command
  • get_taxonomic_ranks command
  • sync command
• phylogeny
  • sync command